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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2699-RA through 18771 annotations produced 1 hits



dPI 3-kinase (Pi3K21B):

Annotation Number : CG2699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020622
Gbrowse : chr2L:297881-303955 (+) // 100.0 //
Probeset : 1622909_at
Accessions : protein= NP_477270;, nucleotide= NM_057922;
Pathway : "0005942 // phosphoinositide 3-kinase complex // inferred from electronic annotation /// 0005942 // phosphoinositide 3-k
Interpro : class IA complex // non-traceable author statement /// 0005943 // 1-phosphatidylinositol-4-phosphate 3-kinase
FlyMine data for FBgn0020622.
BDGP gene expression has embryonic in situ data for Pi3K21B: 16 pix of staining in 8 body parts.
BioGrid reports that CG2699 interacts with CG4821 CG7524 CG9759 CG3981 CG4617 CG6737 CG14026 CG5671 .
TRiP has 2 RNAi stocks for FBgn0020622 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 ± 44 of 4 1.20None
Head99 ± 64 of 4 0.60Down
Eye86 ± 24 of 4 0.50Down
Thoracicoabdominal ganglion155 ± 64 of 4 0.90None
Salivary gland105 ± 154 of 4 0.60Down
Crop186 ± 74 of 4 1.10None
Midgut350 ± 324 of 4 2.00Up
Tubule66 ± 124 of 4 0.40Down
Hindgut201 ± 44 of 4 1.20None
Heart183 ± 114 of 4 1.06None
Fat body157 ± 264 of 4 0.91None
Ovary425 ± 74 of 4 2.40Up
Testis54 ± 34 of 4 0.30Down
Male accessory glands236 ± 54 of 4 1.40Up
Virgin spermatheca96 ± 104 of 4 0.56Down
Mated spermatheca108 ± 44 of 4 0.63Down
Adult carcass101 ± 144 of 4 0.60Down
Larval CNS194 ± 394 of 4 1.12None
Larval Salivary gland302 ± 64 of 4 1.74Up
Larval midgut375 ± 244 of 4 2.16Up
Larval tubule250 ± 204 of 4 1.40Up
Larval hindgut323 ± 84 of 4 1.86Up
Larval fat body163 ± 114 of 4 0.90None
Larval trachea294 ± 294 of 4 1.69Up
Larval carcass274 ± 114 of 4 1.58Up
S2 cells (growing)287 ± 94 of 4 1.66Up
Whole fly173 ± 124 of 4

Looking for CG2699-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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