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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2701-RA through 18771 annotations produced 1 hits

transcript II (CG2701):

Annotation Number : CG2701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024973
Gbrowse : chrX:2611672-2614358 (-) // 100.0 //
Probeset : 1626169_at
Accessions : protein= NP_570025;, nucleotide= NM_130669;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0024973.
BDGP gene expression has embryonic in situ data for EG:95B7.9: 11 pix of staining in 1 body parts.
BioGrid reports that CG2701 interacts with CG2925 .
VDRC has 3 RNAi stocks for FBgn0024973 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain205 54 of 4 2.00Up
Head123 34 of 4 1.20Up
Eye170 104 of 4 1.65Up
Thoracicoabdominal ganglion198 54 of 4 1.90Up
Salivary gland147 84 of 4 1.42Up
Crop124 54 of 4 1.20Up
Midgut97 14 of 4 0.90None
Tubule166 14 of 4 1.60Up
Hindgut126 34 of 4 1.20Up
Heart119 14 of 4 1.15Up
Fat body137 94 of 4 1.33Up
Ovary133 24 of 4 1.30Up
Testis77 24 of 4 0.70Down
Male accessory glands236 124 of 4 2.30Up
Virgin spermatheca135 34 of 4 1.30Up
Mated spermatheca129 74 of 4 1.25Up
Adult carcass140 44 of 4 1.40Up
Larval CNS167 94 of 4 1.61Up
Larval Salivary gland173 54 of 4 1.67Up
Larval midgut110 24 of 4 1.07None
Larval tubule131 54 of 4 1.30Up
Larval hindgut141 74 of 4 1.37Up
Larval fat body115 104 of 4 1.10None
Larval trachea106 04 of 4 1.03None
Larval carcass104 44 of 4 1.01None
S2 cells (growing)124 24 of 4 1.20Up
Whole fly103 24 of 4

Looking for CG2701-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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