Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2709-RA through 18771 annotations produced 1 hits



(CG2709):

Annotation Number : CG2709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024977
Gbrowse : chrX:2620739-2621522 (+) // 100.0 //
Probeset : 1631716_at
Accessions : protein= NP_570026;, nucleotide= NM_130670;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0024977.
BioGrid reports that CG2709 interacts with CG31053 CG32505 CG4325 CG4568 CG6779 CG7238 CG8141 CG8854 .
VDRC has 2 RNAi stocks for FBgn0024977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.70None
Head3 ± 20 of 4 0.60None
Eye7 ± 10 of 4 1.08None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40Down
Salivary gland5 ± 20 of 4 0.74None
Crop2 ± 00 of 4 0.30Down
Midgut3 ± 10 of 4 0.50None
Tubule4 ± 00 of 4 0.70Down
Hindgut4 ± 10 of 4 0.60None
Heart6 ± 21 of 4 0.94None
Fat body5 ± 30 of 4 0.78None
Ovary7 ± 00 of 4 1.10None
Testis21 ± 04 of 4 3.20Up
Male accessory glands6 ± 20 of 4 1.00None
Virgin spermatheca3 ± 10 of 4 0.47None
Mated spermatheca1 ± 00 of 4 0.17Down
Adult carcass5 ± 30 of 4 0.80None
Larval CNS5 ± 20 of 4 0.78None
Larval Salivary gland7 ± 10 of 4 1.05None
Larval midgut3 ± 20 of 4 0.51None
Larval tubule2 ± 10 of 4 0.30Down
Larval hindgut8 ± 12 of 4 1.19None
Larval fat body8 ± 20 of 4 1.30None
Larval trachea6 ± 30 of 4 1.01None
Larval carcass6 ± 20 of 4 0.98None
S2 cells (growing)36 ± 24 of 4 5.28Up
Whole fly6 ± 00 of 4

Looking for CG2709-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime