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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2713-RA through 18771 annotations produced 1 hits



tiny tim 50 (ttm50):

Annotation Number : CG2713
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0250874
Gbrowse : chrX:2624251-2626218 (-) // 100.0 //
Probeset : 1627919_at
Accessions : protein= NP_570027;, nucleotide= NM_130671;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005739 // mitochondrion // inferred from electronic annotati
Interpro : 0004722 // protein serine/threonine phosphatase activity // inferred from sequence or structural similarity /// 0004725
FlyMine data for FBgn0250874.
BioGrid reports that CG2713 interacts with CG6854 CG2835 CG30020 CG3044 CG3618 CG4691 CG4904 CG5235 CG7367 CG7583 CG9623 CG3563 .
VDRC has 3 RNAi stocks for FBgn0250874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 34 of 4 1.00None
Head79 24 of 4 0.60Down
Eye69 54 of 4 0.51Down
Thoracicoabdominal ganglion154 74 of 4 1.10None
Salivary gland131 124 of 4 0.96None
Crop85 54 of 4 0.60Down
Midgut101 44 of 4 0.70Down
Tubule124 44 of 4 0.90Down
Hindgut101 34 of 4 0.70Down
Heart68 54 of 4 0.51Down
Fat body124 134 of 4 0.91None
Ovary241 84 of 4 1.80Up
Testis111 64 of 4 0.80Down
Male accessory glands131 64 of 4 1.00None
Virgin spermatheca65 54 of 4 0.48Down
Mated spermatheca72 34 of 4 0.53Down
Adult carcass99 44 of 4 0.70Down
Larval CNS205 194 of 4 1.51Up
Larval Salivary gland247 84 of 4 1.82Up
Larval midgut113 114 of 4 0.83None
Larval tubule80 64 of 4 0.60Down
Larval hindgut177 94 of 4 1.30Up
Larval fat body63 14 of 4 0.50Down
Larval trachea102 64 of 4 0.75Down
Larval carcass202 344 of 4 1.49None
S2 cells (growing)171 14 of 4 1.26Up
Whole fly136 54 of 4

Looking for CG2713-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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