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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2720-RA through 18771 annotations produced 1 hits



Hsp70/Hsp90 organizing protein homolog (Hop):

Annotation Number : CG2720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024352
Gbrowse : chr2L:295108-297413 (+) // 100.0 //
Probeset : 1630076_at
Accessions : protein= NP_477354;, nucleotide= NM_058006;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0051082 // unfolded protein binding // inferred from seque
FlyMine data for FBgn0024352.
BioGrid reports that CG2720 interacts with CG9117 CG3978 .
TRiP has 2 RNAi stocks for FBgn0024352 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024352 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain303 ± 104 of 4 0.30Down
Head408 ± 284 of 4 0.40Down
Eye383 ± 104 of 4 0.40Down
Thoracicoabdominal ganglion327 ± 124 of 4 0.30Down
Salivary gland320 ± 124 of 4 0.33Down
Crop663 ± 144 of 4 0.70Down
Midgut511 ± 264 of 4 0.50Down
Tubule535 ± 374 of 4 0.60Down
Hindgut414 ± 174 of 4 0.40Down
Heart979 ± 534 of 4 1.01None
Fat body737 ± 354 of 4 0.76Down
Ovary1619 ± 434 of 4 1.70Up
Testis656 ± 284 of 4 0.70Down
Male accessory glands422 ± 254 of 4 0.40Down
Virgin spermatheca369 ± 304 of 4 0.38Down
Mated spermatheca500 ± 134 of 4 0.52Down
Adult carcass513 ± 154 of 4 0.50Down
Larval CNS1145 ± 764 of 4 1.18Up
Larval Salivary gland1328 ± 204 of 4 1.37Up
Larval midgut481 ± 264 of 4 0.50Down
Larval tubule826 ± 244 of 4 0.90Down
Larval hindgut772 ± 554 of 4 0.80Down
Larval fat body696 ± 364 of 4 0.70Down
Larval trachea965 ± 1864 of 4 1.00None
Larval carcass931 ± 384 of 4 0.96None
S2 cells (growing)1360 ± 224 of 4 1.41Up
Whole fly967 ± 284 of 4

Looking for CG2720-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime