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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2736-RA through 18771 annotations produced 1 hits


Annotation Number : CG2736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035090
Gbrowse : chr2R:20860943-20862894 (-) // 100.0 //
Probeset : 1638481_at
Accessions : protein= NP_611991;, nucleotide= NM_138147;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005887 // integral to plasma membrane // non-traceable auth
Interpro : 0005044 // scavenger receptor activity // non-traceable author statement
FlyMine data for FBgn0035090.
BDGP gene expression has embryonic in situ data for CG2736: 10 pix of staining in 2 body parts.
Homophila reports that CG2736 is a close match (6e-15) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
TRiP has 1 RNAi stocks for FBgn0035090 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035090 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 0.20Down
Head1209 714 of 4 4.90Up
Eye755 794 of 4 3.08Up
Thoracicoabdominal ganglion53 44 of 4 0.20Down
Salivary gland21 53 of 4 0.09Down
Crop32 34 of 4 0.10Down
Midgut7 30 of 4 0.00Down
Tubule25 43 of 4 0.10Down
Hindgut66 44 of 4 0.30Down
Heart1077 634 of 4 4.40Up
Fat body2066 1734 of 4 8.44Up
Ovary10 04 of 4 0.00Down
Testis227 144 of 4 0.90None
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1863 684 of 4 7.61Up
Mated spermatheca1428 734 of 4 5.83Up
Adult carcass1235 644 of 4 5.00Up
Larval CNS6 23 of 4 0.03Down
Larval Salivary gland113 104 of 4 0.46Down
Larval midgut21 33 of 4 0.09Down
Larval tubule41 54 of 4 0.20Down
Larval hindgut47 74 of 4 0.19Down
Larval fat body4010 3354 of 416.40Up
Larval trachea47 214 of 4 0.19Down
Larval carcass41 44 of 4 0.17Down
S2 cells (growing)6 11 of 4 0.03Down
Whole fly244 194 of 4

Looking for CG2736-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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