FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2746-RA through 18771 annotations produced 1 hits

ribosomal protein L19 (RpL19):

Annotation Number : CG2746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002607
Gbrowse : chr2R:20855967-20857024 (-) // 100.0 //
Probeset : 1630455_at
Accessions : protein= NP_476631; /// NP_995941;, nucleotide= NM_057283; /// NM_206219;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0002607.
BDGP gene expression has embryonic in situ data for RpL19: 4 pix of staining in 1 body parts.
BioGrid reports that CG2746 interacts with CG4561 CG6998 CG32635 CG5102 CG5174 CG7379 CG7437 CG8843 CG9610 CG9623 CG3936 .
TRiP has 1 RNAi stocks for FBgn0002607 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002607 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2896 ± 57	4 of 4	0.70	Down
Head	4804 ± 214	4 of 4	1.10	None
Eye	6851 ± 120	4 of 4	1.64	Up
Thoracicoabdominal ganglion	4031 ± 103	4 of 4	1.00	None
Salivary gland	10615 ± 543	4 of 4	2.54	Up
Crop	6533 ± 338	4 of 4	1.60	Up
Midgut	5472 ± 195	4 of 4	1.30	Up
Tubule	5695 ± 58	4 of 4	1.40	Up
Hindgut	5154 ± 142	4 of 4	1.20	Up
Heart	7115 ± 481	4 of 4	1.70	Up
Fat body	5901 ± 766	4 of 4	1.41	Up
Ovary	3677 ± 77	4 of 4	0.90	Down
Testis	1404 ± 37	4 of 4	0.30	Down
Male accessory glands	9263 ± 220	4 of 4	2.20	Up
Virgin spermatheca	5061 ± 263	4 of 4	1.21	Up
Mated spermatheca	5206 ± 122	4 of 4	1.24	Up
Adult carcass	6003 ± 300	4 of 4	1.40	Up
Larval CNS	2762 ± 187	4 of 4	0.66	Down
Larval Salivary gland	7466 ± 284	4 of 4	1.78	Up
Larval midgut	5279 ± 137	4 of 4	1.26	Up
Larval tubule	5489 ± 73	4 of 4	1.30	Up
Larval hindgut	4624 ± 85	4 of 4	1.10	Up
Larval fat body	7944 ± 917	4 of 4	1.90	Up
Larval trachea	6452 ± 307	4 of 4	1.54	Up
Larval carcass	5023 ± 395	4 of 4	1.20	None
S2 cells (growing)	4494 ± 104	4 of 4	1.07	None
Whole fly	4185 ± 63	4 of 4

Looking for CG2746-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720