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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2750-RA through 18771 annotations produced 1 hits



(CG2750):

Annotation Number : CG2750
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030376
Gbrowse : chrX:12001232-12007287 (+) // 100.0 //
Probeset : 1633373_at
Accessions : protein= NP_572787;, nucleotide= NM_132559;
FlyMine data for FBgn0030376.
BDGP gene expression has embryonic in situ data for CG2750: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030376 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye4 ± 10 of 4 0.10Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.16Down
Crop5 ± 00 of 4 0.10Down
Midgut5 ± 11 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 00 of 4 0.09Down
Fat body1 ± 00 of 4 0.05Down
Ovary3 ± 10 of 4 0.10Down
Testis560 ± 144 of 413.40Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.15Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass10 ± 31 of 4 0.30Down
Larval CNS2 ± 00 of 4 0.07Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut3 ± 10 of 4 0.07Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body65 ± 324 of 4 1.60None
Larval trachea3 ± 21 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly41 ± 04 of 4

Looking for CG2750-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime