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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2765-RA through 18771 annotations produced 1 hits



/// (CG2765 /// DsimCG2765):

Annotation Number : CG2765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035087
Gbrowse : chr2R:20847361-20852606 (-) // 100.0 //
Probeset : 1633613_at
Accessions : protein= NP_001097451; /// NP_001097452; /// NP_611988;, nucleotide= NM_001103981; /// NM_001103982; /// NM_138144;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035087.
BDGP gene expression has embryonic in situ data for CG2765: 13 pix of staining in 5 body parts.
BioGrid reports that CG2765 interacts with CG6156 .
VDRC has 2 RNAi stocks for FBgn0035087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain542 94 of 4 0.40Down
Head387 114 of 4 0.30Down
Eye448 184 of 4 0.32Down
Thoracicoabdominal ganglion730 214 of 4 0.50Down
Salivary gland110 94 of 4 0.08Down
Crop382 44 of 4 0.30Down
Midgut581 94 of 4 0.40Down
Tubule808 224 of 4 0.60Down
Hindgut391 154 of 4 0.30Down
Heart5971 3254 of 4 4.23Up
Fat body5080 6124 of 4 3.60Up
Ovary260 74 of 4 0.20Down
Testis40 14 of 4 0.00Down
Male accessory glands78 74 of 4 0.10Down
Virgin spermatheca609 504 of 4 0.43Down
Mated spermatheca1340 354 of 4 0.95None
Adult carcass4502 664 of 4 3.20Up
Larval CNS475 234 of 4 0.34Down
Larval Salivary gland92 64 of 4 0.07Down
Larval midgut950 954 of 4 0.67Down
Larval tubule296 194 of 4 0.20Down
Larval hindgut563 334 of 4 0.40Down
Larval fat body257 194 of 4 0.20Down
Larval trachea1270 514 of 4 0.90None
Larval carcass726 384 of 4 0.51Down
S2 cells (growing)1472 124 of 4 1.04None
Whole fly1411 514 of 4

Looking for CG2765-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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