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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2767-RA through 18771 annotations produced 1 hits



(CG2767):

Annotation Number : CG2767
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037537
Gbrowse : chr3R:3831645-3833841 (-) // 100.0 //
Probeset : 1628404_at
Accessions : protein= NP_001138025; /// NP_649757;, nucleotide= NM_001144553; /// NM_141500;
Interpro : 0008106 // alcohol dehydrogenase (NADP+) activity // inferred from sequence or structural similarity /// 0008106 // alco
FlyMine data for FBgn0037537.
BDGP gene expression has embryonic in situ data for CG2767: 4 pix of staining in 1 body parts.
Homophila reports that CG2767 is a close match (5e-55) to human gene (NP_005980), a gene associated with .
BioGrid reports that CG2767 interacts with CG8228 .
VDRC has 1 RNAi stocks for FBgn0037537 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 34 of 4 0.40Down
Head755 204 of 4 3.60Up
Eye2651 2584 of 412.77Up
Thoracicoabdominal ganglion106 34 of 4 0.50Down
Salivary gland291 184 of 4 1.40Up
Crop2725 614 of 413.10Up
Midgut172 164 of 4 0.80None
Tubule168 54 of 4 0.80Down
Hindgut886 204 of 4 4.30Up
Heart305 54 of 4 1.47Up
Fat body418 744 of 4 2.01Up
Ovary244 44 of 4 1.20Up
Testis39 44 of 4 0.20Down
Male accessory glands613 404 of 4 3.00Up
Virgin spermatheca366 94 of 4 1.77Up
Mated spermatheca396 304 of 4 1.91Up
Adult carcass356 124 of 4 1.70Up
Larval CNS315 234 of 4 1.52Up
Larval Salivary gland772 624 of 4 3.72Up
Larval midgut132 94 of 4 0.64Down
Larval tubule280 94 of 4 1.40Up
Larval hindgut638 404 of 4 3.08Up
Larval fat body2256 1594 of 410.90Up
Larval trachea1254 664 of 4 6.04Up
Larval carcass1197 924 of 4 5.77Up
S2 cells (growing)374 94 of 4 1.81Up
Whole fly207 34 of 4

Looking for CG2767-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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