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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2772-RA through 18771 annotations produced 1 hits


(CG2772):

Annotation Number : CG2772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031533
Gbrowse : chr2L:3445996-3447548 (+) // 100.0 //
Probeset : 1633709_at
Accessions : protein= NP_608776;, nucleotide= NM_134932;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0031533.
BDGP gene expression has embryonic in situ data for CG2772: 4 pix of staining in 1 body parts.
Homophila reports that CG2772 is a close match (1e-49) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0031533 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head2 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland2 ± 00 of 4 0.04Down
Crop2 ± 10 of 4 0.00Down
Midgut729 ± 494 of 413.70Up
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.03Down
Fat body1 ± 00 of 4 0.03Down
Ovary2 ± 10 of 4 0.10Down
Testis147 ± 24 of 4 2.80Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 20 of 4 0.06Down
Larval midgut580 ± 104 of 410.93Up
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.07Down
Larval fat body27 ± 132 of 4 0.50None
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.05Down
S2 cells (growing)13 ± 10 of 4 0.25Down
Whole fly53 ± 94 of 4

Looking for CG2772-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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