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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2781-RA through 18771 annotations produced 1 hits



chr3R:3807538-3821568 (-) // 100.0 // ():

Annotation Number : CG2781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634016_at
Accessions : protein= , nucleotide= NP_649754;
Pathway : 0030497 // fatty acid elongation // inferred from sequence or structural similarity /// 0042761 // very long-chain fatty
Interpro : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for full length.
Homophila reports that CG2781 is a close match (5e-52) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 04 of 4 0.00Down
Head1003 794 of 4 2.40Up
Eye330 304 of 4 0.79None
Thoracicoabdominal ganglion16 14 of 4 0.00Down
Salivary gland13 61 of 4 0.03Down
Crop3840 1574 of 4 9.10Up
Midgut249 74 of 4 0.60Down
Tubule162 44 of 4 0.40Down
Hindgut3458 394 of 4 8.20Up
Heart472 584 of 4 1.12None
Fat body668 2144 of 4 1.59None
Ovary120 144 of 4 0.30Down
Testis12 14 of 4 0.00Down
Male accessory glands18 43 of 4 0.00Down
Virgin spermatheca13 13 of 4 0.03Down
Mated spermatheca20 14 of 4 0.05Down
Adult carcass1189 114 of 4 2.80Up
Larval CNS20 54 of 4 0.05Down
Larval Salivary gland3 11 of 4 0.01Down
Larval midgut89 54 of 4 0.21Down
Larval tubule67 34 of 4 0.20Down
Larval hindgut270 144 of 4 0.64Down
Larval fat body5 00 of 4 0.00Down
Larval trachea236 744 of 4 0.56Down
Larval carcass1325 1094 of 4 3.15Up
S2 cells (growing)2 00 of 4 0.01Down
Whole fly421 334 of 4

Looking for CG2781-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime