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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2788-RA through 18771 annotations produced 1 hits

Dorothy (Dot):

Annotation Number : CG2788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015663
Gbrowse : chr2L:3619291-3621171 (+) // 100.0 //
Probeset : 1638330_at
Accessions : protein= NP_524686;, nucleotide= NM_079947;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0015663.
BDGP gene expression has embryonic in situ data for Dot: 4 pix of staining in 1 body parts.
Homophila reports that CG2788 is a close match (1e-31) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 2 RNAi stocks for FBgn0015663 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 13 of 4 0.20Down
Head55 64 of 4 1.40None
Eye121 44 of 4 3.10Up
Thoracicoabdominal ganglion11 04 of 4 0.30Down
Salivary gland59 64 of 4 1.51Up
Crop48 24 of 4 1.20None
Midgut278 134 of 4 7.10Up
Tubule78 24 of 4 2.00Up
Hindgut43 14 of 4 1.10None
Heart148 124 of 4 3.80Up
Fat body78 64 of 4 2.00Up
Ovary28 24 of 4 0.70None
Testis6 12 of 4 0.20Down
Male accessory glands28 44 of 4 0.70None
Virgin spermatheca153 104 of 4 3.92Up
Mated spermatheca105 54 of 4 2.68Up
Adult carcass51 24 of 4 1.30Up
Larval CNS9 14 of 4 0.24Down
Larval Salivary gland178 144 of 4 4.55Up
Larval midgut74 24 of 4 1.90Up
Larval tubule43 24 of 4 1.10None
Larval hindgut45 24 of 4 1.17None
Larval fat body81 134 of 4 2.10None
Larval trachea46 54 of 4 1.20None
Larval carcass26 34 of 4 0.68Down
S2 cells (growing)77 34 of 4 1.97Up
Whole fly39 34 of 4

Looking for CG2788-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime