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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2807-RA through 18771 annotations produced 1 hits



(CG2807):

Annotation Number : CG2807
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031266
Gbrowse : chr2L:568345-572650 (+) // 100.0 //
Probeset : 1633234_at
Accessions : protein= NP_608534;, nucleotide= NM_134690;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity"
FlyMine data for FBgn0031266.
TRiP has 2 RNAi stocks for FBgn0031266 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031266 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 64 of 4 1.30Up
Head100 14 of 4 0.80Down
Eye96 54 of 4 0.75Down
Thoracicoabdominal ganglion147 24 of 4 1.10None
Salivary gland166 94 of 4 1.29Up
Crop106 54 of 4 0.80None
Midgut141 84 of 4 1.10None
Tubule126 44 of 4 1.00None
Hindgut116 54 of 4 0.90None
Heart70 24 of 4 0.55Down
Fat body90 94 of 4 0.70Down
Ovary188 44 of 4 1.50Up
Testis51 44 of 4 0.40Down
Male accessory glands164 14 of 4 1.30Up
Virgin spermatheca59 44 of 4 0.46Down
Mated spermatheca70 44 of 4 0.55Down
Adult carcass86 44 of 4 0.70Down
Larval CNS298 114 of 4 2.32Up
Larval Salivary gland166 74 of 4 1.30Up
Larval midgut93 44 of 4 0.72Down
Larval tubule124 64 of 4 1.00None
Larval hindgut153 24 of 4 1.20Up
Larval fat body76 54 of 4 0.60Down
Larval trachea143 84 of 4 1.12None
Larval carcass151 74 of 4 1.18None
S2 cells (growing)268 104 of 4 2.08Up
Whole fly128 84 of 4

Looking for CG2807-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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