FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2808-RB through 18771 annotations produced 1 hits

():

Annotation Number : CG2808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:3681358-3685110 (+) // 100.0 //
Probeset : 1628894_a_at
Accessions : protein= NP_001097075;, nucleotide= NM_001103605;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	0.90	None
Head	5 ± 1	0 of 4	4.10	None
Eye	1 ± 0	0 of 4	1.09	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.30	None
Salivary gland	4 ± 2	0 of 4	3.25	None
Crop	1 ± 0	0 of 4	1.20	None
Midgut	1 ± 0	0 of 4	1.10	None
Tubule	2 ± 0	0 of 4	1.90	None
Hindgut	2 ± 1	0 of 4	1.40	None
Heart	0 ± 0	0 of 4	0.43	None
Fat body	1 ± 1	0 of 4	1.27	None
Ovary	1 ± 0	0 of 4	1.30	None
Testis	0 ± 0	0 of 4	0.60	None
Male accessory glands	0 ± 0	0 of 4	0.50	None
Virgin spermatheca	0 ± 0	0 of 4	0.41	None
Mated spermatheca	1 ± 0	0 of 4	1.36	None
Adult carcass	4 ± 1	0 of 4	3.40	None
Larval CNS	2 ± 1	0 of 4	1.68	None
Larval Salivary gland	1 ± 0	0 of 4	1.36	None
Larval midgut	0 ± 0	0 of 4	0.66	None
Larval tubule	1 ± 0	0 of 4	1.30	None
Larval hindgut	0 ± 0	0 of 4	0.38	None
Larval fat body	6 ± 2	0 of 4	4.90	None
Larval trachea	0 ± 0	0 of 4	0.36	None
Larval carcass	5 ± 2	0 of 4	3.77	None
S2 cells (growing)	2 ± 0	0 of 4	1.43	None
Whole fly	1 ± 0	0 of 4

Looking for CG2808-RB. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720