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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2822-RA through 18771 annotations produced 1 hits



Shaker cognate w (Shaw):

Annotation Number : CG2822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003386
Gbrowse : chr2L:3718186-3725678 (+) // 100.0 //
Probeset : 1623070_a_at
Accessions : protein= NP_001137782; /// NP_476721; /// NP_722937;, nucleotide= NM_001144310; /// NM_057373; /// NM_164554;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0008076 // voltage-gated potassium cha
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005244 // voltage-gated ion channel activity
FlyMine data for FBgn0003386.
BDGP gene expression has embryonic in situ data for Shaw: 4 pix of staining in 1 body parts.
Homophila reports that CG2822 is a close match (2e-12) to human gene BFNC2;EBN2;KCNQ3 (NP_004510), a gene associated with Epilepsy, benign neonatal, type 2, 121201 (3).
TRiP has 1 RNAi stocks for FBgn0003386 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 74 of 4 9.10Up
Head39 54 of 4 2.20Up
Eye23 44 of 4 1.28None
Thoracicoabdominal ganglion79 94 of 4 4.40Up
Salivary gland12 20 of 4 0.70None
Crop47 34 of 4 2.60Up
Midgut37 42 of 4 2.10Up
Tubule12 01 of 4 0.70Down
Hindgut20 02 of 4 1.10None
Heart2 00 of 4 0.15Down
Fat body13 60 of 4 0.72None
Ovary9 11 of 4 0.50Down
Testis13 00 of 4 0.70None
Male accessory glands20 10 of 4 1.10None
Virgin spermatheca11 20 of 4 0.63None
Mated spermatheca7 10 of 4 0.40Down
Adult carcass18 30 of 4 1.00None
Larval CNS33 54 of 4 1.87Up
Larval Salivary gland20 20 of 4 1.10None
Larval midgut47 20 of 4 2.63Up
Larval tubule13 01 of 4 0.70None
Larval hindgut19 00 of 4 1.08None
Larval fat body21 43 of 4 1.20None
Larval trachea6 20 of 4 0.34Down
Larval carcass10 10 of 4 0.56Down
S2 cells (growing)12 10 of 4 0.71None
Whole fly18 13 of 4

Looking for CG2822-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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