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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2826-RA through 18771 annotations produced 1 hits



Lectin21Ca (lectin-21Ca):

Annotation Number : CG2826
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040107
Gbrowse : chr2L:624679-625453 (+) // 100.0 //
Probeset : 1634808_at
Accessions : protein= NP_652642;, nucleotide= NM_144385;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005534 // galactose binding // inferred from sequence or
FlyMine data for FBgn0040107.
VDRC has 3 RNAi stocks for FBgn0040107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.13Down
Crop1 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.07Down
Fat body13 ± 72 of 4 0.35Down
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 21 of 4 0.10Down
Male accessory glands4403 ± 104 of 4117.20Up
Virgin spermatheca4 ± 10 of 4 0.12Down
Mated spermatheca5 ± 20 of 4 0.15Down
Adult carcass6 ± 40 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland6 ± 10 of 4 0.17Down
Larval midgut2 ± 10 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.06Down
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.06Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly37 ± 44 of 4

Looking for CG2826-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime