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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2827-RA through 18771 annotations produced 1 hits



chr2R:19827935-19829637 (+) // 100.0 // (Transaldolase):

Annotation Number : CG2827
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640549_at
Accessions : protein= , nucleotide= NP_523835;
Pathway : "0005975 // carbohydrate metabolic process // inferred from electronic annotation /// 0006098 // pentose-phosphate shunt
Interpro : non-oxidative branch // non-traceable author statement"
Homophila reports that CG2827 is a close match (8e-118) to human gene TALDO1 (NP_006746), a gene associated with Transaldolase deficiency, 606003 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 44 of 4 0.20Down
Head1948 1474 of 4 1.50Up
Eye1499 1184 of 4 1.12None
Thoracicoabdominal ganglion320 74 of 4 0.20Down
Salivary gland1532 194 of 4 1.15Up
Crop3443 1584 of 4 2.60Up
Midgut1696 914 of 4 1.30Up
Tubule4765 844 of 4 3.60Up
Hindgut1901 264 of 4 1.40Up
Heart3428 2714 of 4 2.57Up
Fat body3954 4134 of 4 2.97Up
Ovary968 114 of 4 0.70Down
Testis119 24 of 4 0.10Down
Male accessory glands519 234 of 4 0.40Down
Virgin spermatheca4597 964 of 4 3.45Up
Mated spermatheca4019 2584 of 4 3.01Up
Adult carcass3557 364 of 4 2.70Up
Larval CNS688 544 of 4 0.52Down
Larval Salivary gland684 104 of 4 0.51Down
Larval midgut657 314 of 4 0.49Down
Larval tubule1081 654 of 4 0.80Down
Larval hindgut496 64 of 4 0.37Down
Larval fat body2151 2624 of 4 1.60None
Larval trachea1024 714 of 4 0.77Down
Larval carcass1235 404 of 4 0.93None
S2 cells (growing)952 154 of 4 0.71Down
Whole fly1333 334 of 4

Looking for CG2827-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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