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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2861-RA through 18771 annotations produced 2 hits



(CG2861):

Annotation Number : CG2861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029728
Gbrowse : chrX:4694468-4697734 (-) // 100.0 //
Probeset : 1631068_a_at
Accessions : protein= NP_572189; /// NP_726958;, nucleotide= NM_131961; /// NM_167021;
FlyMine data for FBgn0029728.
VDRC has 2 RNAi stocks for FBgn0029728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.40Down
Head5 ± 20 of 4 0.60None
Eye3 ± 10 of 4 0.36Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.40None
Salivary gland5 ± 20 of 4 0.55None
Crop7 ± 20 of 4 0.70None
Midgut10 ± 10 of 4 0.90None
Tubule4 ± 00 of 4 0.40Down
Hindgut10 ± 20 of 4 1.00None
Heart0 ± 00 of 4 0.08Down
Fat body7 ± 10 of 4 0.68None
Ovary3 ± 10 of 4 0.30Down
Testis53 ± 64 of 4 5.10Up
Male accessory glands3 ± 10 of 4 0.40None
Virgin spermatheca3 ± 10 of 4 0.30Down
Mated spermatheca1 ± 00 of 4 0.12Down
Adult carcass18 ± 40 of 4 1.70None
Larval CNS2 ± 10 of 4 0.21Down
Larval Salivary gland11 ± 20 of 4 1.11None
Larval midgut4 ± 10 of 4 0.38None
Larval tubule5 ± 10 of 4 0.50None
Larval hindgut6 ± 10 of 4 0.65None
Larval fat body25 ± 51 of 4 2.50None
Larval trachea1 ± 10 of 4 0.15Down
Larval carcass5 ± 30 of 4 0.55None
S2 cells (growing)6 ± 10 of 4 0.65None
Whole fly10 ± 22 of 4



(CG2861):

Annotation Number : CG2861
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029728
Gbrowse : chrX:4691393-4697803 (-) // 100.0 //
Probeset : 1623346_at
Accessions : protein= NP_572189; /// NP_726958;, nucleotide= NM_131961; /// NM_167021;
FlyMine data for FBgn0029728.
VDRC has 2 RNAi stocks for FBgn0029728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 10 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland12 ± 21 of 4 0.78None
Crop4 ± 20 of 4 0.30Down
Midgut1 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart9 ± 04 of 4 0.63None
Fat body3 ± 20 of 4 0.23Down
Ovary1 ± 00 of 4 0.10Down
Testis291 ± 114 of 418.90Up
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.21Down
Mated spermatheca6 ± 11 of 4 0.41Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.15Down
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.10Down
Larval fat body61 ± 244 of 4 4.00None
Larval trachea5 ± 12 of 4 0.34Down
Larval carcass1 ± 10 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly15 ± 23 of 4

Looking for CG2861-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime