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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2863-RA through 18771 annotations produced 1 hits



notchless (Nle):

Annotation Number : CG2863
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021874
Gbrowse : chr2L:566365-568162 (-) // 100.0 //
Probeset : 1632721_at
Accessions : protein= NP_477294;, nucleotide= NM_057946;
Interpro : 0005112 // Notch binding // traceable author statement /// 0005515 // protein binding // inferred from physical interact
FlyMine data for FBgn0021874.
BDGP gene expression has embryonic in situ data for Nle: 14 pix of staining in 19 body parts.
Homophila reports that CG2863 is a close match (8e-13) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
BioGrid reports that CG2863 interacts with CG4006 CG3929 CG3936 CG3936 CG3929 .
VDRC has 3 RNAi stocks for FBgn0021874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 34 of 4 0.60Down
Head55 ± 34 of 4 0.60Down
Eye48 ± 34 of 4 0.51Down
Thoracicoabdominal ganglion75 ± 34 of 4 0.80Down
Salivary gland70 ± 54 of 4 0.74Down
Crop71 ± 24 of 4 0.70Down
Midgut58 ± 44 of 4 0.60Down
Tubule68 ± 54 of 4 0.70Down
Hindgut58 ± 24 of 4 0.60Down
Heart49 ± 64 of 4 0.52Down
Fat body63 ± 44 of 4 0.66Down
Ovary119 ± 24 of 4 1.20Up
Testis30 ± 14 of 4 0.30Down
Male accessory glands103 ± 84 of 4 1.10None
Virgin spermatheca77 ± 34 of 4 0.80Down
Mated spermatheca112 ± 24 of 4 1.17Up
Adult carcass56 ± 44 of 4 0.60Down
Larval CNS143 ± 54 of 4 1.50Up
Larval Salivary gland95 ± 44 of 4 1.00None
Larval midgut42 ± 44 of 4 0.44Down
Larval tubule38 ± 34 of 4 0.40Down
Larval hindgut69 ± 44 of 4 0.72Down
Larval fat body24 ± 34 of 4 0.30Down
Larval trachea119 ± 174 of 4 1.25None
Larval carcass68 ± 114 of 4 0.71None
S2 cells (growing)165 ± 24 of 4 1.73Up
Whole fly96 ± 54 of 4

Looking for CG2863-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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