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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2865-RA through 18771 annotations produced 1 hits


Annotation Number : CG2865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023526
Gbrowse : chrX:2175544-2186779 (-) // 100.0 //
Probeset : 1630025_at
Accessions : protein= NP_569997;, nucleotide= NM_130641;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023526.
BDGP gene expression has embryonic in situ data for EG:25E8.4: 26 pix of staining in 13 body parts.
BioGrid reports that CG2865 interacts with CG5709 CG30460 CG31000 CG32086 CG3225 CG3295 CG3365 CG3443 CG3661 CG4216 CG4294 CG4303 CG5050 CG5380 CG5494 CG5692 CG5893 CG5920 CG6378 CG6695 CG6850 CG7352 CG7763 CG8368 CG8815 CG8816 CG8857 CG9099 CG9638 CG9864 CG31094 .
VDRC has 2 RNAi stocks for FBgn0023526 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 64 of 4 1.60Up
Head51 24 of 4 0.50Down
Eye88 54 of 4 0.86None
Thoracicoabdominal ganglion119 44 of 4 1.20Up
Salivary gland138 64 of 4 1.33Up
Crop50 24 of 4 0.50Down
Midgut84 14 of 4 0.80Down
Tubule270 194 of 4 2.60Up
Hindgut95 44 of 4 0.90None
Heart76 124 of 4 0.74None
Fat body56 94 of 4 0.55Down
Ovary229 44 of 4 2.20Up
Testis262 134 of 4 2.50Up
Male accessory glands95 74 of 4 0.90None
Virgin spermatheca91 104 of 4 0.89None
Mated spermatheca72 74 of 4 0.70Down
Adult carcass55 44 of 4 0.50Down
Larval CNS221 134 of 4 2.15Up
Larval Salivary gland40 24 of 4 0.39Down
Larval midgut65 43 of 4 0.64Down
Larval tubule151 44 of 4 1.50Up
Larval hindgut63 44 of 4 0.62Down
Larval fat body127 174 of 4 1.20None
Larval trachea128 184 of 4 1.24None
Larval carcass87 294 of 4 0.84None
S2 cells (growing)80 84 of 4 0.78None
Whole fly103 34 of 4

Looking for CG2865-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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