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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2875-RA through 18771 annotations produced 1 hits


Annotation Number : CG2875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029672
Gbrowse : chrX:3465753-3467653 (-) // 100.0 //
Probeset : 1638849_a_at
Accessions : protein= NP_570069; /// NP_726876;, nucleotide= NM_130713; /// NM_166981;
FlyMine data for FBgn0029672.
BioGrid reports that CG2875 interacts with CG5009 .
TRiP has 1 RNAi stocks for FBgn0029672 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029672 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 0.20Down
Head52 34 of 4 0.30Down
Eye32 04 of 4 0.18Down
Thoracicoabdominal ganglion36 24 of 4 0.20Down
Salivary gland101 14 of 4 0.57Down
Crop87 24 of 4 0.50Down
Midgut65 64 of 4 0.40Down
Tubule70 214 of 4 0.40Down
Hindgut48 34 of 4 0.30Down
Heart59 24 of 4 0.34Down
Fat body85 124 of 4 0.48Down
Ovary387 124 of 4 2.20Up
Testis9 04 of 4 0.10Down
Male accessory glands186 164 of 4 1.00None
Virgin spermatheca145 64 of 4 0.82Down
Mated spermatheca211 64 of 4 1.19Up
Adult carcass49 54 of 4 0.30Down
Larval CNS229 124 of 4 1.29Up
Larval Salivary gland160 134 of 4 0.90None
Larval midgut46 44 of 4 0.26Down
Larval tubule35 14 of 4 0.20Down
Larval hindgut82 84 of 4 0.47Down
Larval fat body44 84 of 4 0.30Down
Larval trachea199 374 of 4 1.12None
Larval carcass111 264 of 4 0.63None
S2 cells (growing)151 34 of 4 0.85None
Whole fly177 104 of 4

Looking for CG2875-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime