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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2887-RA through 18771 annotations produced 1 hits



(CG2887):

Annotation Number : CG2887
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030207
Gbrowse : chrX:10371290-10372526 (-) // 100.0 //
Probeset : 1640846_at
Accessions : protein= NP_572633;, nucleotide= NM_132405;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation /// 0051082 // unfolded protein binding //
FlyMine data for FBgn0030207.
BDGP gene expression has embryonic in situ data for CG2887: 2 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.30Down
Head7 ± 01 of 4 0.40Down
Eye4 ± 10 of 4 0.26Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.20Down
Salivary gland7 ± 40 of 4 0.47None
Crop3 ± 10 of 4 0.20Down
Midgut7 ± 11 of 4 0.50Down
Tubule6 ± 00 of 4 0.40Down
Hindgut8 ± 12 of 4 0.50Down
Heart3 ± 10 of 4 0.19Down
Fat body9 ± 14 of 4 0.53Down
Ovary2 ± 11 of 4 0.20Down
Testis182 ± 84 of 410.80Up
Male accessory glands7 ± 11 of 4 0.40Down
Virgin spermatheca8 ± 03 of 4 0.50Down
Mated spermatheca8 ± 13 of 4 0.52Down
Adult carcass9 ± 30 of 4 0.60None
Larval CNS5 ± 22 of 4 0.30Down
Larval Salivary gland8 ± 00 of 4 0.51Down
Larval midgut6 ± 22 of 4 0.41Down
Larval tubule3 ± 11 of 4 0.20Down
Larval hindgut4 ± 11 of 4 0.27Down
Larval fat body30 ± 113 of 4 1.80None
Larval trachea4 ± 10 of 4 0.28Down
Larval carcass3 ± 00 of 4 0.19Down
S2 cells (growing)5 ± 01 of 4 0.35Down
Whole fly16 ± 14 of 4

Looking for CG2887-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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