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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2889-RA through 18771 annotations produced 1 hits



(CG2889):

Annotation Number : CG2889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030206
Gbrowse : chrX:10367970-10371235 (+) // 100.0 //
Probeset : 1631385_at
Accessions : protein= NP_572632;, nucleotide= NM_132404;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0030206.
Homophila reports that CG2889 is a close match (1e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG2889 interacts with CG4276 .
VDRC has 3 RNAi stocks for FBgn0030206 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 4 3.10Up
Head41 34 of 4 1.10None
Eye41 14 of 4 1.13None
Thoracicoabdominal ganglion73 34 of 4 2.00Up
Salivary gland71 44 of 4 1.96Up
Crop43 24 of 4 1.20None
Midgut27 34 of 4 0.80None
Tubule30 04 of 4 0.80Down
Hindgut34 24 of 4 0.90None
Heart16 14 of 4 0.46Down
Fat body18 33 of 4 0.51Down
Ovary55 24 of 4 1.50Up
Testis44 24 of 4 1.20None
Male accessory glands53 24 of 4 1.50Up
Virgin spermatheca17 14 of 4 0.47Down
Mated spermatheca14 22 of 4 0.39Down
Adult carcass39 14 of 4 1.10None
Larval CNS81 54 of 4 2.23Up
Larval Salivary gland49 34 of 4 1.37Up
Larval midgut38 44 of 4 1.05None
Larval tubule40 24 of 4 1.10None
Larval hindgut30 14 of 4 0.83None
Larval fat body29 03 of 4 0.80None
Larval trachea29 44 of 4 0.82None
Larval carcass34 44 of 4 0.96None
S2 cells (growing)40 44 of 4 1.12None
Whole fly36 24 of 4

Looking for CG2889-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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