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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2911-RA through 18771 annotations produced 1 hits



(CG2911):

Annotation Number : CG2911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037350
Gbrowse : chr3R:1447858-1448873 (-) // 100.0 //
Probeset : 1638431_at
Accessions : protein= NP_001097689; /// NP_649559;, nucleotide= NM_001104219; /// NM_141302;
Interpro : 0031072 // heat shock protein binding // inferred from electronic annotation
FlyMine data for FBgn0037350.
VDRC has 2 RNAi stocks for FBgn0037350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 14 of 4 0.90None
Head63 ± 54 of 4 1.10None
Eye105 ± 34 of 4 1.87Up
Thoracicoabdominal ganglion60 ± 34 of 4 1.10None
Salivary gland88 ± 54 of 4 1.56Up
Crop130 ± 44 of 4 2.30Up
Midgut51 ± 14 of 4 0.90Down
Tubule99 ± 34 of 4 1.80Up
Hindgut75 ± 14 of 4 1.30Up
Heart100 ± 14 of 4 1.78Up
Fat body78 ± 44 of 4 1.39Up
Ovary81 ± 04 of 4 1.40Up
Testis22 ± 14 of 4 0.40Down
Male accessory glands42 ± 14 of 4 0.70Down
Virgin spermatheca61 ± 34 of 4 1.09None
Mated spermatheca76 ± 44 of 4 1.36Up
Adult carcass65 ± 54 of 4 1.20None
Larval CNS46 ± 64 of 4 0.82None
Larval Salivary gland69 ± 54 of 4 1.23None
Larval midgut57 ± 44 of 4 1.02None
Larval tubule89 ± 54 of 4 1.60Up
Larval hindgut82 ± 104 of 4 1.46None
Larval fat body205 ± 104 of 4 3.60Up
Larval trachea42 ± 54 of 4 0.76Down
Larval carcass65 ± 64 of 4 1.15None
S2 cells (growing)106 ± 24 of 4 1.88Up
Whole fly56 ± 14 of 4

Looking for CG2911-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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