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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2914-RA through 18771 annotations produced 1 hits



Ets at 21C (Ets21C):

Annotation Number : CG2914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005660
Gbrowse : chr2L:547413-552454 (-) // 100.0 //
Probeset : 1638915_at
Accessions : protein= NP_001097047; /// NP_523445;, nucleotide= NM_001103577; /// NM_078721;
Pathway : DNA-dependent // inferred from electronic annotation /// 0048813 // dendrite morphogenesis // inferred from mutant phen
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // non-traceable author sta
FlyMine data for FBgn0005660.
BDGP gene expression has embryonic in situ data for Ets21C: 12 pix of staining in 6 body parts.
Homophila reports that CG2914 is a close match (6e-14) to human gene ETV6;TEL (NP_001978), a gene associated with Leukemia, acute myeloid, somatic, 601626 (3).
TRiP has 1 RNAi stocks for FBgn0005660 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005660 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 14 of 4 2.20Up
Head7 ± 23 of 4 1.60None
Eye4 ± 20 of 4 0.95None
Thoracicoabdominal ganglion12 ± 14 of 4 2.70Up
Salivary gland14 ± 10 of 4 3.20Up
Crop9 ± 12 of 4 2.10Up
Midgut16 ± 13 of 4 3.60Up
Tubule13 ± 12 of 4 2.90Up
Hindgut6 ± 02 of 4 1.50None
Heart5 ± 21 of 4 1.19None
Fat body9 ± 42 of 4 2.01None
Ovary3 ± 12 of 4 0.90None
Testis9 ± 13 of 4 2.00None
Male accessory glands8 ± 20 of 4 1.80None
Virgin spermatheca5 ± 11 of 4 1.20None
Mated spermatheca5 ± 10 of 4 1.12None
Adult carcass7 ± 31 of 4 1.70None
Larval CNS12 ± 14 of 4 2.84Up
Larval Salivary gland4 ± 10 of 4 0.97None
Larval midgut16 ± 23 of 4 3.54Up
Larval tubule5 ± 20 of 4 1.30None
Larval hindgut8 ± 13 of 4 1.92None
Larval fat body11 ± 20 of 4 2.60None
Larval trachea12 ± 81 of 4 2.71None
Larval carcass12 ± 24 of 4 2.71Up
S2 cells (growing)84 ± 94 of 418.66Up
Whole fly4 ± 00 of 4

Looking for CG2914-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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