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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2915-RB through 18771 annotations produced 1 hits



(CG2915):

Annotation Number : CG2915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033241
Gbrowse : chr2R:3845702-3847532 (-) // 100.0 //
Probeset : 1641215_s_at
Accessions : protein= NP_610338; /// NP_724631;, nucleotide= NM_136494; /// NM_165577;
Pathway : 0031982 // vesicle // inferred from direct assay
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004181 // metallocarboxypeptidase activ
FlyMine data for FBgn0033241.
BDGP gene expression has embryonic in situ data for CG2915: 31 pix of staining in 8 body parts.
BioGrid reports that CG2915 interacts with CG6905 CG9331 .
VDRC has 2 RNAi stocks for FBgn0033241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 74 of 4 0.60Down
Head137 24 of 4 0.50Down
Eye172 34 of 4 0.57Down
Thoracicoabdominal ganglion177 34 of 4 0.60Down
Salivary gland340 124 of 4 1.13None
Crop217 64 of 4 0.70Down
Midgut186 34 of 4 0.60Down
Tubule2338 804 of 4 7.70Up
Hindgut222 74 of 4 0.70Down
Heart229 74 of 4 0.76None
Fat body151 174 of 4 0.50Down
Ovary373 84 of 4 1.20None
Testis136 54 of 4 0.50Down
Male accessory glands318 44 of 4 1.10None
Virgin spermatheca116 114 of 4 0.39Down
Mated spermatheca128 44 of 4 0.43Down
Adult carcass116 74 of 4 0.40Down
Larval CNS362 144 of 4 1.20None
Larval Salivary gland1087 754 of 4 3.60Up
Larval midgut225 134 of 4 0.75Down
Larval tubule3886 724 of 412.90Up
Larval hindgut242 84 of 4 0.80None
Larval fat body111 74 of 4 0.40Down
Larval trachea520 344 of 4 1.72Up
Larval carcass320 194 of 4 1.06None
S2 cells (growing)805 284 of 4 2.67Up
Whole fly301 244 of 4

Looking for CG2915-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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