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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2925-RA through 18771 annotations produced 1 hits



noisette (noi):

Annotation Number : CG2925
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014366
Gbrowse : chr3R:1415316-1417180 (-) // 100.0 //
Probeset : 1630805_at
Accessions : protein= NP_477114;, nucleotide= NM_057766;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
FlyMine data for FBgn0014366.
BDGP gene expression has embryonic in situ data for noi: 4 pix of staining in 1 body parts.
BioGrid reports that CG2925 interacts with CG3052 CG31029 CG31758 CG3193 CG32086 CG3998 CG40127 CG5519 CG7937 CG8569 CG9028 CG9426 CG9539 CG9638 CG4528 CG4528 Dmel CG18350 Dmel CG18350 .
TRiP has 1 RNAi stocks for FBgn0014366 available for purchase.
VDRC has 3 RNAi stocks for FBgn0014366 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 ± 74 of 4 1.00None
Head143 ± 134 of 4 0.60Down
Eye150 ± 94 of 4 0.63Down
Thoracicoabdominal ganglion165 ± 64 of 4 0.70Down
Salivary gland148 ± 24 of 4 0.62Down
Crop184 ± 64 of 4 0.80Down
Midgut168 ± 54 of 4 0.70Down
Tubule161 ± 124 of 4 0.70Down
Hindgut161 ± 24 of 4 0.70Down
Heart114 ± 54 of 4 0.48Down
Fat body140 ± 154 of 4 0.59Down
Ovary440 ± 54 of 4 1.80Up
Testis171 ± 74 of 4 0.70Down
Male accessory glands296 ± 124 of 4 1.20Up
Virgin spermatheca221 ± 74 of 4 0.92None
Mated spermatheca237 ± 74 of 4 0.99None
Adult carcass94 ± 14 of 4 0.40Down
Larval CNS509 ± 224 of 4 2.12Up
Larval Salivary gland327 ± 114 of 4 1.36Up
Larval midgut133 ± 104 of 4 0.56Down
Larval tubule160 ± 84 of 4 0.70Down
Larval hindgut202 ± 54 of 4 0.84None
Larval fat body150 ± 34 of 4 0.60Down
Larval trachea291 ± 254 of 4 1.21Up
Larval carcass219 ± 74 of 4 0.91None
S2 cells (growing)235 ± 34 of 4 0.98None
Whole fly240 ± 144 of 4

Looking for CG2925-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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