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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2926-RA through 18771 annotations produced 1 hits



(CG2926):

Annotation Number : CG2926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037344
Gbrowse : chr3R:1405865-1414097 (-) // 100.0 //
Probeset : 1627390_at
Accessions : protein= NP_649554;, nucleotide= NM_141297;
Pathway : via spliceosome // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred by curator
FlyMine data for FBgn0037344.
BioGrid reports that CG2926 interacts with CG5303 CG32075 CG3294 CG3654 CG4264 CG4394 CG5289 CG5478 CG8319 .
TRiP has 1 RNAi stocks for FBgn0037344 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 ± 24 of 4 1.70Up
Head67 ± 14 of 4 0.80Down
Eye36 ± 24 of 4 0.43Down
Thoracicoabdominal ganglion70 ± 54 of 4 0.80None
Salivary gland86 ± 73 of 4 1.00None
Crop86 ± 24 of 4 1.00None
Midgut64 ± 23 of 4 0.80Down
Tubule28 ± 13 of 4 0.30Down
Hindgut81 ± 54 of 4 0.90None
Heart29 ± 24 of 4 0.34Down
Fat body30 ± 93 of 4 0.35Down
Ovary202 ± 104 of 4 2.30Up
Testis80 ± 54 of 4 0.90None
Male accessory glands66 ± 64 of 4 0.80Down
Virgin spermatheca14 ± 10 of 4 0.17Down
Mated spermatheca18 ± 20 of 4 0.21Down
Adult carcass60 ± 52 of 4 0.70Down
Larval CNS161 ± 144 of 4 1.87Up
Larval Salivary gland119 ± 134 of 4 1.38None
Larval midgut20 ± 10 of 4 0.24Down
Larval tubule67 ± 14 of 4 0.80Down
Larval hindgut56 ± 34 of 4 0.66Down
Larval fat body54 ± 54 of 4 0.60Down
Larval trachea48 ± 34 of 4 0.56Down
Larval carcass34 ± 43 of 4 0.40Down
S2 cells (growing)194 ± 64 of 4 2.25Up
Whole fly86 ± 34 of 4

Looking for CG2926-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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