FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2934-RA through 18771 annotations produced 1 hits

vacuolar ATPsintase subunit 1 (VhaAC39-1):

Annotation Number : CG2934
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028665
Gbrowse : chrX:3774772-3777004 (+) // 100.0 //
Probeset : 1633535_at
Accessions : protein= NP_570080;, nucleotide= NM_130724;
Pathway : "0000220 // vacuolar proton-transporting V-type ATPase
Interpro : V0 domain // inferred from sequence or structural similarity /// 0000220 // vacuolar proton-transporting V-type ATPase
FlyMine data for FBgn0028665.
BDGP gene expression has embryonic in situ data for VhaAC39: 16 pix of staining in 13 body parts.
BioGrid reports that CG2934 interacts with CG4303 CG4328 CG6025 CG6058 CG7450 CG7937 CG8219 .
TRiP has 1 RNAi stocks for FBgn0028665 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028665 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1069 ± 16	4 of 4	1.40	Up
Head	788 ± 64	4 of 4	1.10	None
Eye	834 ± 32	4 of 4	1.12	None
Thoracicoabdominal ganglion	1039 ± 21	4 of 4	1.40	Up
Salivary gland	4106 ± 111	4 of 4	5.50	Up
Crop	678 ± 16	4 of 4	0.90	None
Midgut	2203 ± 21	4 of 4	2.90	Up
Tubule	2650 ± 73	4 of 4	3.50	Up
Hindgut	2671 ± 57	4 of 4	3.60	Up
Heart	567 ± 7	4 of 4	0.76	None
Fat body	312 ± 35	4 of 4	0.42	Down
Ovary	716 ± 5	4 of 4	1.00	None
Testis	198 ± 8	4 of 4	0.30	Down
Male accessory glands	428 ± 10	4 of 4	0.60	Down
Virgin spermatheca	498 ± 19	4 of 4	0.67	Down
Mated spermatheca	554 ± 24	4 of 4	0.74	None
Adult carcass	473 ± 29	4 of 4	0.60	Down
Larval CNS	606 ± 69	4 of 4	0.81	None
Larval Salivary gland	1209 ± 11	4 of 4	1.62	Up
Larval midgut	2275 ± 107	4 of 4	3.05	Up
Larval tubule	1964 ± 123	4 of 4	2.60	Up
Larval hindgut	2904 ± 20	4 of 4	3.89	Up
Larval fat body	467 ± 28	4 of 4	0.60	Down
Larval trachea	972 ± 68	4 of 4	1.30	Up
Larval carcass	1064 ± 31	4 of 4	1.42	Up
S2 cells (growing)	803 ± 13	4 of 4	1.08	None
Whole fly	747 ± 71	4 of 4

Looking for CG2934-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720