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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2944-RB through 18771 annotations produced 1 hits



gustavus (gus):

Annotation Number : CG2944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026238
Gbrowse : chr2R:1004714-1015817 (-) // 100.0 //
Probeset : 1641300_s_at
Accessions : protein= NP_610158; /// NP_724398; /// NP_724399; /// NP_724400; /// NP_724401; /// NP_724402;, nucleotide= NM_136314; /// NM_165418; /// NM_165419; /// NM_165420; /// NM_165421; /// NM_165422;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0026238.
BioGrid reports that CG2944 interacts with CG18001 CG4059 CG8223 CG9291 CG5376 CG6921 CG7347 CG8016 CG8404 CG8495 CG8817 CG9916 .
VDRC has 2 RNAi stocks for FBgn0026238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1022 164 of 4 0.90None
Head637 284 of 4 0.60Down
Eye648 214 of 4 0.60Down
Thoracicoabdominal ganglion945 454 of 4 0.90None
Salivary gland747 484 of 4 0.69Down
Crop584 194 of 4 0.50Down
Midgut401 204 of 4 0.40Down
Tubule478 44 of 4 0.40Down
Hindgut536 14 of 4 0.50Down
Heart397 54 of 4 0.37Down
Fat body348 144 of 4 0.32Down
Ovary2345 184 of 4 2.20Up
Testis76 34 of 4 0.10Down
Male accessory glands543 194 of 4 0.50Down
Virgin spermatheca576 624 of 4 0.53Down
Mated spermatheca613 354 of 4 0.57Down
Adult carcass376 184 of 4 0.30Down
Larval CNS858 154 of 4 0.79Down
Larval Salivary gland638 54 of 4 0.59Down
Larval midgut352 184 of 4 0.33Down
Larval tubule802 354 of 4 0.70Down
Larval hindgut543 64 of 4 0.50Down
Larval fat body836 814 of 4 0.80None
Larval trachea652 374 of 4 0.60Down
Larval carcass682 334 of 4 0.63Down
S2 cells (growing)651 164 of 4 0.60Down
Whole fly1079 654 of 4

Looking for CG2944-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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