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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2947-RB through 18771 annotations produced 1 hits



anon-fast-evolving-1A9 /// anon-fast-evolving-1A9 (HIP /// HIP-R):

Annotation Number : CG2947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029676 /// FBgn0260484
Gbrowse : chrUextra:6767552-6768386 (+) // 40.03 // /// chrX:3684069-3695604 (+) // 100.0 // /// chrX:3684788-3686511 (+) // 78.71 //
Probeset : 1623408_s_at
Accessions : protein= NP_570074; /// NP_726885; /// NP_726886;, nucleotide= NM_130718; /// NM_166988; /// NM_166989;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0043234 // protein complex // inferred from sequence or
Interpro : 0005488 // binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from sequence
FlyMine data for FBgn0029676 /// FBgn0260484.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain525 ± 164 of 4 0.80Down
Head429 ± 104 of 4 0.70Down
Eye501 ± 194 of 4 0.80Down
Thoracicoabdominal ganglion535 ± 64 of 4 0.80Down
Salivary gland376 ± 44 of 4 0.60Down
Crop599 ± 244 of 4 1.00None
Midgut339 ± 114 of 4 0.50Down
Tubule729 ± 194 of 4 1.20Up
Hindgut373 ± 124 of 4 0.60Down
Heart633 ± 494 of 4 1.01None
Fat body801 ± 524 of 4 1.27Up
Ovary909 ± 284 of 4 1.40Up
Testis1010 ± 704 of 4 1.60Up
Male accessory glands478 ± 44 of 4 0.80Down
Virgin spermatheca564 ± 224 of 4 0.90None
Mated spermatheca647 ± 254 of 4 1.03None
Adult carcass394 ± 304 of 4 0.60Down
Larval CNS1415 ± 1294 of 4 2.25Up
Larval Salivary gland673 ± 224 of 4 1.07None
Larval midgut633 ± 164 of 4 1.01None
Larval tubule731 ± 44 of 4 1.20Up
Larval hindgut690 ± 224 of 4 1.10None
Larval fat body1177 ± 544 of 4 1.90Up
Larval trachea617 ± 1504 of 4 0.98None
Larval carcass700 ± 144 of 4 1.11None
S2 cells (growing)405 ± 94 of 4 0.64Down
Whole fly630 ± 294 of 4

Looking for CG2947-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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