Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2957-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S9 (mRpS9):

Annotation Number : CG2957
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037529
Gbrowse : chr3R:3714996-3728384 (-) // 100.0 //
Probeset : 1640142_at
Accessions : protein= NP_524270;, nucleotide= NM_079546;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0037529.
BDGP gene expression has embryonic in situ data for mRpS9: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain316 34 of 4 1.00None
Head451 64 of 4 1.50Up
Eye1249 294 of 4 4.11Up
Thoracicoabdominal ganglion523 164 of 4 1.70Up
Salivary gland429 104 of 4 1.41Up
Crop474 84 of 4 1.60Up
Midgut335 64 of 4 1.10None
Tubule222 54 of 4 0.70Down
Hindgut522 324 of 4 1.70Up
Heart591 74 of 4 1.94Up
Fat body455 474 of 4 1.50Up
Ovary355 104 of 4 1.20Up
Testis102 74 of 4 0.30Down
Male accessory glands214 124 of 4 0.70Down
Virgin spermatheca487 174 of 4 1.61Up
Mated spermatheca389 134 of 4 1.28Up
Adult carcass413 244 of 4 1.40Up
Larval CNS287 314 of 4 0.95None
Larval Salivary gland342 274 of 4 1.13None
Larval midgut238 74 of 4 0.78Down
Larval tubule339 154 of 4 1.10None
Larval hindgut451 204 of 4 1.49Up
Larval fat body276 334 of 4 0.90None
Larval trachea402 234 of 4 1.32Up
Larval carcass360 144 of 4 1.19Up
S2 cells (growing)354 104 of 4 1.17Up
Whole fly304 164 of 4

Looking for CG2957-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime