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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2958-RA through 18771 annotations produced 1 hits



Lectin24Db (lectin-24Db):

Annotation Number : CG2958
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040102
Gbrowse : chr2L:4188122-4189285 (+) // 100.0 //
Probeset : 1630256_at
Accessions : protein= NP_652641;, nucleotide= NM_144384;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005534 // galactose binding // inferred from sequence or
FlyMine data for FBgn0040102.
BDGP gene expression has embryonic in situ data for lectin-24Db: 4 pix of staining in 1 body parts.
Homophila reports that CG2958 is a close match (7e-11) to human gene GRMP;SELP (NP_002996), a gene associated with Platelet alpha/delta storage pool deficiency (1);{Atopy, susceptibility to}, 147050 (3).
VDRC has 3 RNAi stocks for FBgn0040102 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 1.90Up
Head202 ± 74 of 4 7.90Up
Eye43 ± 44 of 4 1.72Up
Thoracicoabdominal ganglion22 ± 14 of 4 0.90None
Salivary gland6 ± 20 of 4 0.24Down
Crop2 ± 00 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule22 ± 52 of 4 0.90None
Hindgut1 ± 00 of 4 0.10Down
Heart817 ± 324 of 432.06Up
Fat body22 ± 63 of 4 0.87None
Ovary2 ± 00 of 4 0.10Down
Testis15 ± 14 of 4 0.60Down
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca9 ± 30 of 4 0.36Down
Mated spermatheca13 ± 30 of 4 0.53Down
Adult carcass184 ± 94 of 4 7.20Up
Larval CNS1 ± 00 of 4 0.05Down
Larval Salivary gland4 ± 10 of 4 0.18Down
Larval midgut51 ± 74 of 4 2.03Up
Larval tubule189 ± 214 of 4 7.40Up
Larval hindgut11 ± 11 of 4 0.46Down
Larval fat body65 ± 203 of 4 2.60None
Larval trachea62 ± 144 of 4 2.44Up
Larval carcass88 ± 124 of 4 3.48Up
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly25 ± 24 of 4

Looking for CG2958-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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