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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2960-RA through 18771 annotations produced 1 hits



chr2L:4227641-4228563 (+) // 100.0 // (ubiquitin 52-AA extension protein):

Annotation Number : CG2960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633277_at
Accessions : protein= , nucleotide= NP_476776;
Pathway : "0006325 // chromatin organization // non-traceable author statement /// 0006355 // regulation of transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006412 // translation // inferred from sequence or structural simi
FlyMine data for full length.
BioGrid reports that CG2960 interacts with CG3353 CG6805 CG3099 CG31006 CG3847 CG5111 CG6808 CG7285 CG8884 CG9448 CG31094 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2584 ± 474 of 4 0.80Down
Head3688 ± 1164 of 4 1.20Up
Eye5400 ± 994 of 4 1.74Up
Thoracicoabdominal ganglion3451 ± 744 of 4 1.10None
Salivary gland7782 ± 1734 of 4 2.51Up
Crop4395 ± 1974 of 4 1.40Up
Midgut4063 ± 654 of 4 1.30Up
Tubule2091 ± 544 of 4 0.70Down
Hindgut3992 ± 1214 of 4 1.30Up
Heart5213 ± 3564 of 4 1.68Up
Fat body4330 ± 2654 of 4 1.40Up
Ovary2634 ± 614 of 4 0.80Down
Testis815 ± 144 of 4 0.30Down
Male accessory glands6169 ± 1724 of 4 2.00Up
Virgin spermatheca4237 ± 1974 of 4 1.37Up
Mated spermatheca4234 ± 1774 of 4 1.36Up
Adult carcass4201 ± 1104 of 4 1.40Up
Larval CNS2283 ± 1324 of 4 0.74Down
Larval Salivary gland5945 ± 2804 of 4 1.92Up
Larval midgut3039 ± 674 of 4 0.98None
Larval tubule3560 ± 674 of 4 1.10Up
Larval hindgut3272 ± 264 of 4 1.05None
Larval fat body5630 ± 6114 of 4 1.80Up
Larval trachea5038 ± 1794 of 4 1.62Up
Larval carcass3831 ± 2864 of 4 1.23None
S2 cells (growing)3770 ± 804 of 4 1.21Up
Whole fly3103 ± 1254 of 4

Looking for CG2960-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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