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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2968-RA through 18771 annotations produced 1 hits



chrX:10107004-10108274 (+) // 100.0 // (lethal (1) G0230):

Annotation Number : CG2968
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637737_at
Accessions : protein= , nucleotide= NP_572610;
Pathway : 0015986 // ATP synthesis coupled proton transport // inferred from electronic annotation /// 0015992 // proton transport
Interpro : "0000275 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1192 214 of 4 0.70Down
Head1653 334 of 4 1.00None
Eye1703 454 of 4 1.04None
Thoracicoabdominal ganglion1444 344 of 4 0.90Down
Salivary gland3420 864 of 4 2.08Up
Crop1798 864 of 4 1.10None
Midgut1874 464 of 4 1.10Up
Tubule1906 614 of 4 1.20Up
Hindgut2801 994 of 4 1.70Up
Heart2093 334 of 4 1.27Up
Fat body2684 2444 of 4 1.63Up
Ovary1202 64 of 4 0.70Down
Testis275 94 of 4 0.20Down
Male accessory glands1236 334 of 4 0.80Down
Virgin spermatheca2441 1264 of 4 1.48Up
Mated spermatheca2128 664 of 4 1.29Up
Adult carcass3389 1424 of 4 2.10Up
Larval CNS1268 754 of 4 0.77Down
Larval Salivary gland1728 524 of 4 1.05None
Larval midgut1537 254 of 4 0.93Down
Larval tubule1127 1424 of 4 0.70Down
Larval hindgut2375 684 of 4 1.44Up
Larval fat body718 824 of 4 0.40Down
Larval trachea1333 504 of 4 0.81Down
Larval carcass2531 2244 of 4 1.54Up
S2 cells (growing)955 264 of 4 0.58Down
Whole fly1645 294 of 4

Looking for CG2968-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime