FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG2969-RA through 18771 annotations produced 1 hits

ABC transporter expressed in trachea (Atet):

Annotation Number : CG2969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020762
Gbrowse : chr2L:4333925-4345411 (+) // 100.0 //
Probeset : 1629559_s_at
Accessions : protein= NP_001097078; /// NP_001097079; /// NP_523471; /// NP_722971;, nucleotide= NM_001103608; /// NM_001103609; /// NM_078747; /// NM_164580;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0020762.
BDGP gene expression has embryonic in situ data for Atet: 47 pix of staining in 12 body parts.
Homophila reports that CG2969 is a close match (7e-11) to human gene ABCB2;PSF1;RING4;TAP1 (NP_000584), a gene associated with Bare lymphocyte syndrome, type I, 604571 (3).
VDRC has 3 RNAi stocks for FBgn0020762 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	268 ± 1	4 of 4	3.20	Up
Head	203 ± 4	4 of 4	2.40	Up
Eye	330 ± 17	4 of 4	3.97	Up
Thoracicoabdominal ganglion	245 ± 7	4 of 4	2.90	Up
Salivary gland	137 ± 10	4 of 4	1.65	Up
Crop	151 ± 6	4 of 4	1.80	Up
Midgut	135 ± 6	4 of 4	1.60	Up
Tubule	59 ± 5	4 of 4	0.70	Down
Hindgut	61 ± 3	4 of 4	0.70	Down
Heart	211 ± 3	4 of 4	2.54	Up
Fat body	273 ± 22	4 of 4	3.28	Up
Ovary	54 ± 3	4 of 4	0.70	Down
Testis	82 ± 3	4 of 4	1.00	None
Male accessory glands	45 ± 5	4 of 4	0.50	Down
Virgin spermatheca	102 ± 5	4 of 4	1.23	Up
Mated spermatheca	240 ± 15	4 of 4	2.89	Up
Adult carcass	163 ± 8	4 of 4	2.00	Up
Larval CNS	118 ± 6	4 of 4	1.42	Up
Larval Salivary gland	45 ± 3	4 of 4	0.54	Down
Larval midgut	246 ± 38	4 of 4	2.96	Up
Larval tubule	211 ± 18	4 of 4	2.50	Up
Larval hindgut	99 ± 13	4 of 4	1.19	None
Larval fat body	39 ± 7	4 of 4	0.50	Down
Larval trachea	134 ± 35	4 of 4	1.61	None
Larval carcass	69 ± 6	4 of 4	0.83	None
S2 cells (growing)	162 ± 1	4 of 4	1.95	Up
Whole fly	83 ± 2	4 of 4

Looking for CG2969-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720