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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2975-RA through 18771 annotations produced 1 hits



(CG2975):

Annotation Number : CG2975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031468
Gbrowse : chr2L:2840996-2842438 (+) // 100.0 //
Probeset : 1633410_at
Accessions : protein= NP_608719;, nucleotide= NM_134875;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016757 // transferase activity
FlyMine data for FBgn0031468.
Homophila reports that CG2975 is a close match (9e-19) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
BioGrid reports that CG2975 interacts with CG8571 CG3403 .
VDRC has 1 RNAi stocks for FBgn0031468 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.30Down
Head10 ± 11 of 4 0.50Down
Eye4 ± 10 of 4 0.18Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.30Down
Salivary gland39 ± 43 of 4 1.70Up
Crop92 ± 34 of 4 4.00Up
Midgut23 ± 20 of 4 1.00None
Tubule13 ± 10 of 4 0.60Down
Hindgut43 ± 24 of 4 1.90Up
Heart1 ± 10 of 4 0.08Down
Fat body22 ± 63 of 4 0.99None
Ovary4 ± 01 of 4 0.20Down
Testis14 ± 14 of 4 0.60Down
Male accessory glands1345 ± 244 of 458.40Up
Virgin spermatheca13 ± 13 of 4 0.58Down
Mated spermatheca13 ± 32 of 4 0.57None
Adult carcass22 ± 20 of 4 1.00None
Larval CNS11 ± 10 of 4 0.50Down
Larval Salivary gland72 ± 84 of 4 3.13Up
Larval midgut23 ± 12 of 4 1.01None
Larval tubule12 ± 10 of 4 0.50Down
Larval hindgut120 ± 74 of 4 5.23Up
Larval fat body9 ± 40 of 4 0.40Down
Larval trachea68 ± 104 of 4 2.97Up
Larval carcass32 ± 41 of 4 1.43None
S2 cells (growing)12 ± 00 of 4 0.53Down
Whole fly23 ± 14 of 4

Looking for CG2975-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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