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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2984-RA through 18771 annotations produced 1 hits



Protein phosphatase 2C (Pp2C1):

Annotation Number : CG2984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022768
Gbrowse : chrX:4574432-4580904 (-) // 100.0 //
Probeset : 1631320_at
Accessions : protein= NP_525074;, nucleotide= NM_080335;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0022768.
BioGrid reports that CG2984 interacts with CG4552 CG32171 CG6253 CG6386 .
TRiP has 1 RNAi stocks for FBgn0022768 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain75 14 of 4 1.20None
Head43 31 of 4 0.70Down
Eye29 40 of 4 0.47Down
Thoracicoabdominal ganglion74 34 of 4 1.20None
Salivary gland49 40 of 4 0.79None
Crop61 23 of 4 1.00None
Midgut34 50 of 4 0.50Down
Tubule64 43 of 4 1.00None
Hindgut48 21 of 4 0.80None
Heart35 14 of 4 0.57Down
Fat body33 50 of 4 0.54Down
Ovary121 34 of 4 1.90Up
Testis147 74 of 4 2.40Up
Male accessory glands29 50 of 4 0.50Down
Virgin spermatheca52 61 of 4 0.83None
Mated spermatheca45 00 of 4 0.72Down
Adult carcass54 60 of 4 0.90None
Larval CNS88 64 of 4 1.41Up
Larval Salivary gland79 54 of 4 1.26None
Larval midgut28 40 of 4 0.46Down
Larval tubule39 12 of 4 0.60Down
Larval hindgut39 10 of 4 0.62Down
Larval fat body31 71 of 4 0.50Down
Larval trachea39 31 of 4 0.63Down
Larval carcass38 20 of 4 0.62Down
S2 cells (growing)86 34 of 4 1.38Up
Whole fly62 54 of 4

Looking for CG2984-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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