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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2986-RA through 18771 annotations produced 1 hits



Ribosomal protein S21 (oho23B):

Annotation Number : CG2986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015521
Gbrowse : chr2L:2856111-2857000 (+) // 100.0 //
Probeset : 1623644_s_at
Accessions : protein= NP_523462; /// NP_722853; /// NP_722854;, nucleotide= NM_078738; /// NM_164506; /// NM_164507;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from direct assay /
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0015521.
BioGrid reports that CG2986 interacts with CG32036 CG33017 CG5216 CG7832 CG7987 CG8120 CG8292 CG14792 .
VDRC has 2 RNAi stocks for FBgn0015521 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2901 764 of 4 0.70Down
Head4603 1874 of 4 1.10None
Eye6528 764 of 4 1.59Up
Thoracicoabdominal ganglion4397 1194 of 4 1.10None
Salivary gland11680 4594 of 4 2.84Up
Crop5758 3464 of 4 1.40Up
Midgut5179 974 of 4 1.30Up
Tubule6706 1314 of 4 1.60Up
Hindgut4714 624 of 4 1.10None
Heart6939 5134 of 4 1.69Up
Fat body5347 7314 of 4 1.30Up
Ovary3146 1004 of 4 0.80Down
Testis1337 254 of 4 0.30Down
Male accessory glands9134 3174 of 4 2.20Up
Virgin spermatheca5394 1884 of 4 1.31Up
Mated spermatheca5527 2324 of 4 1.35Up
Adult carcass5930 2844 of 4 1.40Up
Larval CNS2409 1784 of 4 0.59Down
Larval Salivary gland7626 3814 of 4 1.86Up
Larval midgut4570 1674 of 4 1.11None
Larval tubule4434 1124 of 4 1.10None
Larval hindgut4002 654 of 4 0.97None
Larval fat body7408 8364 of 4 1.80Up
Larval trachea6434 3064 of 4 1.57Up
Larval carcass4212 3534 of 4 1.03None
S2 cells (growing)3863 1194 of 4 0.94None
Whole fly4107 2774 of 4

Looking for CG2986-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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