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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2987-RA through 18771 annotations produced 1 hits



alpha-catenin related (alpha-catenin-related):

Annotation Number : CG2987
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029105
Gbrowse : chr2R:19845629-19849148 (+) // 100.0 //
Probeset : 1630043_a_at
Accessions : protein= NP_652073;, nucleotide= NM_143816;
Pathway : 0005915 // zonula adherens // inferred from sequence or structural similarity /// 0015629 // actin cytoskeleton // infer
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005198 // structural molecule activity
FlyMine data for FBgn0029105.
BioGrid reports that CG2987 interacts with CG4183 CG4818 CG6157 CG7892 CG9426 .
TRiP has 1 RNAi stocks for FBgn0029105 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain315 54 of 419.50Up
Head96 34 of 4 5.90Up
Eye158 54 of 4 9.78Up
Thoracicoabdominal ganglion272 54 of 416.80Up
Salivary gland19 31 of 4 1.17None
Crop7 11 of 4 0.50Down
Midgut8 21 of 4 0.50Down
Tubule12 02 of 4 0.80Down
Hindgut7 02 of 4 0.50Down
Heart5 00 of 4 0.34Down
Fat body3 20 of 4 0.22Down
Ovary4 00 of 4 0.30Down
Testis9 04 of 4 0.60Down
Male accessory glands5 20 of 4 0.30Down
Virgin spermatheca9 12 of 4 0.61Down
Mated spermatheca12 13 of 4 0.76None
Adult carcass17 14 of 4 1.10None
Larval CNS196 64 of 412.14Up
Larval Salivary gland9 32 of 4 0.56None
Larval midgut11 21 of 4 0.72None
Larval tubule8 11 of 4 0.50Down
Larval hindgut5 01 of 4 0.33Down
Larval fat body3 10 of 4 0.20Down
Larval trachea7 51 of 4 0.45Down
Larval carcass7 01 of 4 0.44Down
S2 cells (growing)3 10 of 4 0.24Down
Whole fly16 14 of 4

Looking for CG2987-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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