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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG2990-RA through 18771 annotations produced 1 hits


Annotation Number : CG2990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030170
Gbrowse : chrX:9904535-9908312 (+) // 100.0 //
Probeset : 1631131_a_at
Accessions : protein= NP_001096933; /// NP_727386;, nucleotide= NM_001103463; /// NM_167214;
Interpro : "0000014 // single-stranded DNA specific endodeoxyribonuclease activity // inferred from sequence or structural similari
FlyMine data for FBgn0030170.
BDGP gene expression has embryonic in situ data for CG2990: 4 pix of staining in 1 body parts.
Homophila reports that CG2990 is a close match (1e-17) to human gene ALS4;AOA2;SCAR1;SETX (NP_055861), a gene associated with Amyotrophic lateral sclerosis 4, juvenile, 602433 (3);Ataxia-ocular apraxia-2, 606002 (3).
VDRC has 2 RNAi stocks for FBgn0030170 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head5 11 of 4 0.10Down
Eye3 20 of 4 0.08Down
Thoracicoabdominal ganglion5 10 of 4 0.10Down
Salivary gland8 00 of 4 0.21Down
Crop8 11 of 4 0.20Down
Midgut4 10 of 4 0.10Down
Tubule6 00 of 4 0.20Down
Hindgut6 11 of 4 0.20Down
Heart2 00 of 4 0.06Down
Fat body9 34 of 4 0.24Down
Ovary132 34 of 4 3.20Up
Testis6 12 of 4 0.10Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.15Down
Mated spermatheca6 12 of 4 0.15Down
Adult carcass7 00 of 4 0.20Down
Larval CNS26 24 of 4 0.64Down
Larval Salivary gland22 14 of 4 0.54Down
Larval midgut9 11 of 4 0.22Down
Larval tubule8 12 of 4 0.20Down
Larval hindgut11 03 of 4 0.28Down
Larval fat body13 31 of 4 0.30Down
Larval trachea14 22 of 4 0.34Down
Larval carcass11 04 of 4 0.27Down
S2 cells (growing)32 14 of 4 0.79None
Whole fly41 44 of 4

Looking for CG2990-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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