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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2998-RA through 18771 annotations produced 1 hits



Ribosomal protein S28b (RpS28b):

Annotation Number : CG2998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030136
Gbrowse : chrX:9448651-9449254 (+) // 100.0 //
Probeset : 1624792_at
Accessions : protein= NP_572568;, nucleotide= NM_132340;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0030136.
BioGrid reports that CG2998 interacts with CG32635 CG3365 CG4887 .
TRiP has 1 RNAi stocks for FBgn0030136 available for purchase.
VDRC has 5 RNAi stocks for FBgn0030136 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3575 1054 of 4 0.80None
Head5068 1834 of 4 1.10None
Eye6908 1164 of 4 1.56Up
Thoracicoabdominal ganglion4888 1044 of 4 1.10None
Salivary gland14654 4554 of 4 3.31Up
Crop6677 4064 of 4 1.50Up
Midgut5889 1944 of 4 1.30Up
Tubule5344 1354 of 4 1.20Up
Hindgut5408 1404 of 4 1.20Up
Heart7737 5374 of 4 1.75Up
Fat body5770 8954 of 4 1.30None
Ovary3682 704 of 4 0.80None
Testis1388 154 of 4 0.30Down
Male accessory glands10050 2994 of 4 2.30Up
Virgin spermatheca5300 2484 of 4 1.20None
Mated spermatheca5566 1934 of 4 1.26Up
Adult carcass6443 3984 of 4 1.50Up
Larval CNS2792 2454 of 4 0.63Down
Larval Salivary gland8004 3684 of 4 1.81Up
Larval midgut5400 1614 of 4 1.22Up
Larval tubule5759 534 of 4 1.30Up
Larval hindgut4650 904 of 4 1.05None
Larval fat body8046 8984 of 4 1.80Up
Larval trachea6940 2874 of 4 1.57Up
Larval carcass5118 4874 of 4 1.16None
S2 cells (growing)4632 1154 of 4 1.05None
Whole fly4430 2824 of 4

Looking for CG2998-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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