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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG2999-RA through 18771 annotations produced 1 hits



lethal (4) ry16 (unc-13):

Annotation Number : CG2999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025726
Gbrowse : chr4:891550-925419 (-) // 100.0 //
Probeset : 1635684_a_at
Accessions : protein= NP_651949; /// NP_726614; /// NP_726615;, nucleotide= NM_143692; /// NM_166793; /// NM_166794;
Pathway : 0008021 // synaptic vesicle // inferred from sequence or structural similarity /// 0008021 // synaptic vesicle // non-tr
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // traceable author s
FlyMine data for FBgn0025726.
Homophila reports that CG2999 is a close match (4e-15) to human gene PKCA;PRKCA (NP_002728), a gene associated with Pituitary tumor, invasive (3).
TRiP has 1 RNAi stocks for FBgn0025726 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2184 ± 884 of 420.70Up
Head422 ± 154 of 4 4.00Up
Eye521 ± 534 of 4 4.94Up
Thoracicoabdominal ganglion1621 ± 424 of 415.40Up
Salivary gland31 ± 34 of 4 0.30Down
Crop152 ± 54 of 4 1.40Up
Midgut30 ± 24 of 4 0.30Down
Tubule13 ± 12 of 4 0.10Down
Hindgut81 ± 24 of 4 0.80None
Heart136 ± 64 of 4 1.29Up
Fat body110 ± 64 of 4 1.05None
Ovary88 ± 24 of 4 0.80None
Testis24 ± 14 of 4 0.20Down
Male accessory glands41 ± 14 of 4 0.40Down
Virgin spermatheca126 ± 124 of 4 1.20None
Mated spermatheca90 ± 34 of 4 0.86None
Adult carcass100 ± 44 of 4 1.00None
Larval CNS822 ± 724 of 4 7.79Up
Larval Salivary gland43 ± 74 of 4 0.41Down
Larval midgut21 ± 14 of 4 0.20Down
Larval tubule13 ± 04 of 4 0.10Down
Larval hindgut25 ± 14 of 4 0.24Down
Larval fat body24 ± 24 of 4 0.20Down
Larval trachea93 ± 74 of 4 0.89None
Larval carcass35 ± 24 of 4 0.34Down
S2 cells (growing)111 ± 54 of 4 1.06None
Whole fly105 ± 84 of 4

Looking for CG2999-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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