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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30000-RA through 18771 annotations produced 1 hits



(CG30000):

Annotation Number : CG30000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050000
Gbrowse : chr2R:5493494-5494683 (+) // 100.0 //
Probeset : 1631513_at
Accessions : protein= NP_610509;, nucleotide= NM_136665;
FlyMine data for FBgn0050000.
BioGrid reports that CG30000 interacts with CG32096 .
TRiP has 1 RNAi stocks for FBgn0050000 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 54 of 4 0.40Down
Head264 94 of 4 0.70Down
Eye215 234 of 4 0.60Down
Thoracicoabdominal ganglion178 134 of 4 0.50Down
Salivary gland172 84 of 4 0.48Down
Crop225 94 of 4 0.60Down
Midgut398 184 of 4 1.10None
Tubule1126 214 of 4 3.20Up
Hindgut297 84 of 4 0.80Down
Heart432 134 of 4 1.21Up
Fat body532 434 of 4 1.49Up
Ovary577 104 of 4 1.60Up
Testis225 64 of 4 0.60Down
Male accessory glands156 44 of 4 0.40Down
Virgin spermatheca998 864 of 4 2.80Up
Mated spermatheca797 714 of 4 2.24Up
Adult carcass381 134 of 4 1.10None
Larval CNS294 404 of 4 0.82Down
Larval Salivary gland819 334 of 4 2.30Up
Larval midgut367 94 of 4 1.03None
Larval tubule794 534 of 4 2.20Up
Larval hindgut429 94 of 4 1.20Up
Larval fat body1079 1144 of 4 3.00Up
Larval trachea625 834 of 4 1.75Up
Larval carcass540 254 of 4 1.51Up
S2 cells (growing)739 124 of 4 2.07Up
Whole fly356 134 of 4

Looking for CG30000-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime