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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30002-RA through 18771 annotations produced 1 hits



/// (CG1773 /// CG30002):

Annotation Number : CG30002
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260474
Gbrowse : chr2R:5591887-5593039 (+) // 100.0 // /// chr2R:5593775-5594922 (+) // 90.45 //
Probeset : 1624236_at
Accessions : protein= NP_001163100; /// NP_724818;, nucleotide= NM_001169629; /// NM_165691;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0260474.
Homophila reports that CG30002 is a close match (8e-11) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_076927), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).
VDRC has 5 RNAi stocks for FBgn0260474 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 0.20Down
Head333 ± 264 of 4 3.60Up
Eye167 ± 354 of 4 1.79None
Thoracicoabdominal ganglion15 ± 12 of 4 0.20Down
Salivary gland18 ± 51 of 4 0.20Down
Crop12 ± 31 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule22 ± 41 of 4 0.20Down
Hindgut45 ± 74 of 4 0.50Down
Heart355 ± 264 of 4 3.81Up
Fat body886 ± 514 of 4 9.51Up
Ovary2 ± 10 of 4 0.00Down
Testis45 ± 44 of 4 0.50Down
Male accessory glands9 ± 20 of 4 0.10Down
Virgin spermatheca711 ± 674 of 4 7.63Up
Mated spermatheca726 ± 524 of 4 7.80Up
Adult carcass476 ± 304 of 4 5.10Up
Larval CNS2 ± 00 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.05Down
Larval midgut6 ± 12 of 4 0.07Down
Larval tubule6 ± 00 of 4 0.10Down
Larval hindgut5 ± 02 of 4 0.05Down
Larval fat body51 ± 74 of 4 0.60Down
Larval trachea6 ± 91 of 4 0.06Down
Larval carcass6 ± 10 of 4 0.07Down
S2 cells (growing)46 ± 14 of 4 0.49Down
Whole fly93 ± 64 of 4

Looking for CG30002-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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