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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30005-RA through 18771 annotations produced 1 hits



(CG30005):

Annotation Number : CG30005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050005
Gbrowse : chr2R:5494805-5495536 (+) // 100.0 //
Probeset : 1631258_at
Accessions : protein= NP_724816;, nucleotide= NM_165690;
FlyMine data for FBgn0050005.
BioGrid reports that CG30005 interacts with CG9283 .
VDRC has 2 RNAi stocks for FBgn0050005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 54 of 4 0.70Down
Head133 14 of 4 0.90None
Eye171 64 of 4 1.12None
Thoracicoabdominal ganglion112 44 of 4 0.70Down
Salivary gland154 74 of 4 1.01None
Crop319 104 of 4 2.10Up
Midgut259 114 of 4 1.70Up
Tubule121 44 of 4 0.80Down
Hindgut252 64 of 4 1.60Up
Heart383 164 of 4 2.51Up
Fat body240 414 of 4 1.57Up
Ovary253 54 of 4 1.70Up
Testis57 24 of 4 0.40Down
Male accessory glands165 114 of 4 1.10None
Virgin spermatheca106 64 of 4 0.69Down
Mated spermatheca104 34 of 4 0.68Down
Adult carcass226 64 of 4 1.50Up
Larval CNS110 34 of 4 0.72Down
Larval Salivary gland97 54 of 4 0.64Down
Larval midgut137 104 of 4 0.90None
Larval tubule74 34 of 4 0.50Down
Larval hindgut125 84 of 4 0.82None
Larval fat body182 124 of 4 1.20None
Larval trachea137 144 of 4 0.90None
Larval carcass98 104 of 4 0.65Down
S2 cells (growing)294 104 of 4 1.93Up
Whole fly153 84 of 4

Looking for CG30005-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime