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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30007-RB through 18771 annotations produced 1 hits



(CG30007):

Annotation Number : CG30007
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050007
Gbrowse : chr2R:5779504-5786018 (+) // 99.87 //
Probeset : 1632352_a_at
Accessions : protein= NP_001163105; /// NP_001163106; /// NP_610533; /// NP_724855;, nucleotide= NM_001169634; /// NM_001169635; /// NM_136689; /// NM_165719;
FlyMine data for FBgn0050007.
BioGrid reports that CG30007 interacts with CG5053 .
VDRC has 1 RNAi stocks for FBgn0050007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 14 of 4 1.30Up
Head26 ± 14 of 4 0.50Down
Eye16 ± 04 of 4 0.31Down
Thoracicoabdominal ganglion51 ± 24 of 4 1.00None
Salivary gland33 ± 22 of 4 0.61Down
Crop27 ± 24 of 4 0.50Down
Midgut28 ± 24 of 4 0.50Down
Tubule32 ± 24 of 4 0.60Down
Hindgut21 ± 14 of 4 0.40Down
Heart16 ± 13 of 4 0.30Down
Fat body26 ± 24 of 4 0.49Down
Ovary124 ± 14 of 4 2.30Up
Testis100 ± 34 of 4 1.90Up
Male accessory glands28 ± 24 of 4 0.50Down
Virgin spermatheca17 ± 14 of 4 0.33Down
Mated spermatheca18 ± 04 of 4 0.35Down
Adult carcass28 ± 24 of 4 0.50Down
Larval CNS63 ± 44 of 4 1.18None
Larval Salivary gland41 ± 24 of 4 0.77None
Larval midgut20 ± 24 of 4 0.39Down
Larval tubule41 ± 04 of 4 0.80None
Larval hindgut23 ± 04 of 4 0.43Down
Larval fat body34 ± 104 of 4 0.60None
Larval trachea29 ± 54 of 4 0.55Down
Larval carcass26 ± 14 of 4 0.49Down
S2 cells (growing)78 ± 04 of 4 1.46Up
Whole fly53 ± 44 of 4

Looking for CG30007-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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