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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3001-RA through 18771 annotations produced 1 hits



hexokinase A (Hex-A):

Annotation Number : CG3001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001186
Gbrowse : chrX:9479917-9482437 (+) // 100.0 //
Probeset : 1625638_a_at
Accessions : protein= NP_524848; /// NP_727350;, nucleotide= NM_080109; /// NM_167194;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004396 // hexokinase activity // inferred fro
FlyMine data for FBgn0001186.
BDGP gene expression has embryonic in situ data for Hex-A: 17 pix of staining in 9 body parts.
Homophila reports that CG3001 is a close match (1e-112) to human gene GCK;HHF3 (NP_277042), a gene associated with Diabetes mellitus, gestational, 125851 (3);Diabetes mellitus, noninsulin-dependent, late onset, 125853 (3);Diabetes mellitus, permanent neonatal, 606176 (3);Hyperinsulinemic hypoglycemia, familial, 3, 602485 (3);MODY, type II, 125851 (3).
BioGrid reports that CG3001 interacts with CG9993 CG6576 CG8942 .
TRiP has 1 RNAi stocks for FBgn0001186 available for purchase.
VDRC has 2 RNAi stocks for FBgn0001186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain802 ± 94 of 4 2.10Up
Head415 ± 244 of 4 1.10None
Eye954 ± 564 of 4 2.44Up
Thoracicoabdominal ganglion919 ± 484 of 4 2.40Up
Salivary gland816 ± 1154 of 4 2.09Up
Crop466 ± 124 of 4 1.20Up
Midgut344 ± 84 of 4 0.90Down
Tubule812 ± 884 of 4 2.10Up
Hindgut520 ± 114 of 4 1.30Up
Heart698 ± 614 of 4 1.79Up
Fat body292 ± 424 of 4 0.75Down
Ovary347 ± 24 of 4 0.90Down
Testis198 ± 154 of 4 0.50Down
Male accessory glands247 ± 64 of 4 0.60Down
Virgin spermatheca888 ± 534 of 4 2.27Up
Mated spermatheca1053 ± 1174 of 4 2.69Up
Adult carcass724 ± 664 of 4 1.90Up
Larval CNS435 ± 504 of 4 1.11None
Larval Salivary gland288 ± 144 of 4 0.74Down
Larval midgut404 ± 454 of 4 1.03None
Larval tubule126 ± 44 of 4 0.30Down
Larval hindgut129 ± 84 of 4 0.33Down
Larval fat body169 ± 104 of 4 0.40Down
Larval trachea147 ± 204 of 4 0.38Down
Larval carcass329 ± 314 of 4 0.84None
S2 cells (growing)182 ± 144 of 4 0.47Down
Whole fly391 ± 124 of 4

Looking for CG3001-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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