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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG30011-RB through 18771 annotations produced 1 hits



persephone (gem):

Annotation Number : CG30011
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050011
Gbrowse : chr2R:6011449-6024984 (+) // 99.86 //
Probeset : 1625370_s_at
Accessions : protein= NP_610556; /// NP_724893; /// NP_724895;, nucleotide= NM_136712; /// NM_165748; /// NM_165750;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0050011.
BDGP gene expression has embryonic in situ data for CG30011: 26 pix of staining in 19 body parts.
Homophila reports that CG30011 is a close match (6e-18) to human gene TFCP2L3;DFNA28 (NP_079191), a gene associated with Deafness, autosomal dominant 28, 608641 (3).
BioGrid reports that CG30011 interacts with CG30011 CG7382 CG6046 CG7001 .
TRiP has 2 RNAi stocks for FBgn0050011 available for purchase.
VDRC has 4 RNAi stocks for FBgn0050011 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1322 ± 434 of 4 3.80Up
Head953 ± 414 of 4 2.80Up
Eye1139 ± 84 of 4 3.30Up
Thoracicoabdominal ganglion1769 ± 674 of 4 5.10Up
Salivary gland626 ± 404 of 4 1.81Up
Crop409 ± 124 of 4 1.20Up
Midgut703 ± 164 of 4 2.00Up
Tubule411 ± 234 of 4 1.20Up
Hindgut979 ± 254 of 4 2.80Up
Heart832 ± 244 of 4 2.41Up
Fat body916 ± 524 of 4 2.65Up
Ovary141 ± 54 of 4 0.40Down
Testis70 ± 24 of 4 0.20Down
Male accessory glands394 ± 234 of 4 1.10None
Virgin spermatheca784 ± 294 of 4 2.27Up
Mated spermatheca718 ± 194 of 4 2.08Up
Adult carcass632 ± 384 of 4 1.80Up
Larval CNS1124 ± 414 of 4 3.26Up
Larval Salivary gland163 ± 124 of 4 0.47Down
Larval midgut395 ± 174 of 4 1.15None
Larval tubule759 ± 274 of 4 2.20Up
Larval hindgut705 ± 274 of 4 2.04Up
Larval fat body1192 ± 1024 of 4 3.50Up
Larval trachea368 ± 354 of 4 1.07None
Larval carcass499 ± 244 of 4 1.45Up
S2 cells (growing)1015 ± 314 of 4 2.94Up
Whole fly345 ± 134 of 4

Looking for CG30011-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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